AB asks, 'are you in those particles?', meaning atoms and molecules in the brain; this issue has been discussed at length in psychology, neurology and philosophy. For example, when you see red, does this mean that neurons have little flags on them with 'RED' displayed? Probably not. Or when you taste chocolate, does each neuron taste of chocolate? Or if you could lick your brain, would it taste likewise?
Well, no. Obviously, there is a gap in our knowledge as to how neurological processes end up as perceptions and sensations and ideas.
Into these gaps, AB inserts his soul and his God. But how does the soul know how to see red or taste chocolate? I would be very interested to see some articles which explain this.