No, I was saying that because, as you point out, the logical conclusion of respecting conscience is that isis should be respected, therefore we should not allow freedom of conscience at all: to the extent that religious organisations which will not allow women or practicing homosexuals to be priests should be shut down or their scriptures altered/banned.
In other words, there has to be some freedom of conscience. I'd say that this ought to be judged by whether harm is caused to a person as a result of being discriminated against. Since there are other ways for homosexuals to marry, such as through a civil registrar, and also other options available to them, such as civil partnerships or celibacy, it is not harmful to them if they are declined by a religious organisation.