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However, if none of the discoveries or theories of science are questioned but people have other reasons to believe in deeper aspects of reality than what science has discovered.....why should scientists and such people have a problem with that? This deals with matters beyond science.
It's not that it's a problem it's that if people are making claims about what is "beyond science", especially if they are linking it to science (as you so often do) then it's up to them to give credible reasons to take their ideas seriously. If it's a matter of baseless conjecture or blind faith then they should admit it. Personal faith isn't an issue, you can believe anything you like - but if you're putting it to other people (especially if you are linking it to science), if it is nothing but a personal belief, then you should say so.
The usual argument appears to be that....such believers do not have a 'proper' understanding of science...
Sometimes there is a misunderstanding of science (such as thinking natural selection is a metaphor) but the main issue is as sated above.
1. People of science tend to position themselves as people with superior reasoning capabilities...
Pots and kettles spring to mind...
2. There is no such thing as a 'proper' understanding of science. Most scientists themselves have only a partial and incomplete understanding of discoveries beyond their specialized area of study. Also, most theories are even today only tentative...
Theories are
always tentative. A theory, by its nature, has a proper understanding.
3. It is clearly a feeling of threat and insecurity that makes such science enthusiasts so vociferous and even vitriolic in the defense of their ideas. It is a strong reaction born of set ideas. Almost a fear of some supernatural idea being thrust down their throats or fear of being told how to live. It is an egocentric fear of losing control.
Sounds like it's you who feels threatened. It really is simple: if you think you have some reason to suggest something 'supernatural' or beyond science and you want to convince others of it, then it's up to you to provide the rationale. If your rationale is criticised perhaps it's because it really isn't up to much.
If you try to link your ideas to science, or compare it with scientific hypotheses or conjectures, and your understanding of the relevant science is flawed then you can expect to have it pointed out.
I really don't care what you personally believe but if you're presenting it on a public forum as factual and have provided no good reasons to accept it, or if you are misrepresenting a scientific theory or are drawing questionable parallels between scientific hypotheses or conjectures and your own ideas, then, if I have the time and the relevant knowledge, I will point these things out.